PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g038560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HB-other
Protein Properties Length: 260aa    MW: 28814.1 Da    PI: 6.094
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g038560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.39.3e-072233354
                    HHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox 33 LAkklgLterqVkvWFqNrRak 54
                    LAk++gLt +qV++WF N R +
  Csa06g038560.1  2 LAKQTGLTRSQVSNWFINARVR 23
                    9*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-14134IPR009057Homeodomain-like
SuperFamilySSF466892.69E-9134IPR009057Homeodomain-like
PROSITE profilePS5007110.171127IPR001356Homeobox domain
PfamPF059209.7E-9123IPR008422Homeobox KN domain
CDDcd000861.98E-7227No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MLAKQTGLTR SQVSNWFINA RVRLWKPMVE EMYMEEMKEQ GKNMGSMEKN PLDQSNEDSA  60
SKSTSNQEKS PMADTYHMNP NHNGDLEGVT GMQGSPKRLR TSEETMMQPI NADFSSNEKL  120
TMKILEERQG IRSDGGYPFM GNFGQYQMDE MSRFDVVSDQ ELMAQRYSGN NNGVSLTLGL  180
PHCDSLSSTH HQGFMQTHHG NPIGRRVKIG ETEEYGAAAI NGGGSATNAH SSAAAAAAYN  240
GMNIQNQKRY VAQLLPDFVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2272720.0AK227272.1 Arabidopsis thaliana mRNA for putative homeodomain transcription factor, complete cds, clone: RAFL11-09-C20.
GenBankAY0721750.0AY072175.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds.
GenBankAY0965480.0AY096548.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds.
GenBankAY0998540.0AY099854.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds.
GenBankBT0084220.0BT008422.1 Arabidopsis thaliana At2g35940 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010509532.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_010516801.10.0PREDICTED: BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-164BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLR0HRR21e-167R0HRR2_9BRAS; Uncharacterized protein
STRINGBra017277.1-P1e-163(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2179422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-156BEL1-like homeodomain 1